PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.7NG082000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family bHLH
Protein Properties Length: 403aa    MW: 40108.9 Da    PI: 6.9806
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.7NG082000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.7e-10252299455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                          +h+ +Er RR+ri +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Pavir.7NG082000.1.p 252 SHSLAERVRRERISERMKMLQSLVPGC----NKITGKALMLDEIINYVQSLQ 299
                          8**************************....999*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.01E-11246303No hitNo description
SuperFamilySSF474594.58E-17246316IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.0E-17248318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.694248298IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-7252299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.2E-10254304IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MADEHFFPGP GDFPSGLGAA PFIGASYSYA PPGAGLDAAE MQGLGLAWAD LQLPDSSGAA  60
HFDSALSSLV SSPAHNGSGC GYGDDVAIGD LIGRLGSICA AASASNSCYS TPLSSPPRGA  120
APSPAFRGCC GHPGGASAAA LEAPGAGGRL SRVASSMSLG AGAATPASGS PVAEASRPEM  180
APMGSGSAGT RDPAPPAKKK RKASAGKGKA TSAAVVGGGA AEGKAGADTA AEKEPAKDYI  240
HVRARRGQAT DSHSLAERVR RERISERMKM LQSLVPGCNK ITGKALMLDE IINYVQSLQR  300
QVEFLSMKLA TMNPELDADQ AAAAMLAPPP AAFACSYVAA AAADPSSAAH PAQLVDSYAG  360
AFLPAGWAAQ QGDLHSAAAF DACHDHGHGL HAPPSPPARH GK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004977901.21e-132PREDICTED: transcription factor bHLH78-like
TrEMBLA0A0A9GES51e-104A0A0A9GES5_ARUDO; Uncharacterized protein
TrEMBLF2DD471e-104F2DD47_HORVD; Predicted protein
TrEMBLM0Y8W11e-104M0Y8W1_HORVD; Uncharacterized protein
STRINGMLOC_66841.11e-104(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125472835
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.18e-46bHLH family protein